[gmx-users] How to define protein surface residues

Lee Soin nomadoro at gmail.com
Tue Mar 3 12:09:20 CET 2009


Thanks, but what I mean is to just find out the surface residues, not to
calculate the surface area.

2009/3/3 David van der Spoel <spoel at xray.bmc.uu.se>

> Lee Soin wrote:
>
>> Hello!
>> I'm trying to find the surface residues of a protein. Maybe this should be
>> calculated by myself and not using GROMACS. Can anybody tell me a feasible
>> procedure for doing so? Thanks!
>>
> g_sas
>
>  --
>> Sun Li
>> Department of Physics
>> Nanjing University, China
>>
>>
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>
>
> --
> David van der Spoel, Ph.D., Professor of Biology
> Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
> Box 596, 75124 Uppsala, Sweden. Phone:  +46184714205. Fax: +4618511755.
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-- 
Sun Li
Department of Physics
Nanjing University, China
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