[gmx-users] pdb2gmx -vsite h hangs

[Mark Abraham]

Ilya Chorny wrote:
> 
> Hi I am running 4.0.3. I wanted to test the 4fs timestep with virtual 
> sites. I will be running a simulation with ~500K atoms. 

At least your GMXLIB environment variable is pointing to a CVS version 
of 4.0.4 (if you named that correctly). If you're having trouble, make 
sure you have a clean install of a known and preferably most-recent 
version. The wiki has a page on the correct use of GMXRC to make sure of 
such things.

Mark