[gmx-users] problem about compiling mdrun_mpi under cygwin

Mark Abraham Mark.Abraham at anu.edu.au
Wed Mar 11 18:10:09 CET 2009

Xiang Mao wrote:
> Hi, there:
>      I met a problem when I try to compile mdrun_mpi using configure 
> --enable-mpi, I have mpich2 installed. I got some error message like the 
> following(sorry, it is too long, hope you do not mind). I am wondering 
> if anyone could tell me how to deal with it. Thank you so much.
> Best wishes,
> mao
> mpicc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused 
> -funroll-all-loops    mdrun.c   -o mdrun
> mdrun.c:40:22: typedefs.h: No such file or directory
> mdrun.c:41:20: macros.h: No such file or directory
> make[1]: *** [mdrun] Error 1
> make[1]: Leaving directory `/cygdrive/c/tools/gromacs-4.0.4/src/kernel'

This make command doesn't look like it was issued from the right place. 
See http://wiki.gromacs.org/index.php/Cygwin_HOWTO also.


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