[gmx-users] "Now there are 16 atoms. Deleted 304 duplicates."

xiaowu759 at hotmail.com xiaowu759 at hotmail.com
Sat Mar 14 09:06:07 CET 2009

  As a small test, I want to simulate polystyene(PS) using GROMACS. Firstly, I obtain a pdb file of a PS chain consisting of 20 repeating unit(320 atoms totally ) and add the STY residues to the .rtp files. while running pdb2gmx, the procedure was finished "successfully". but I find that only 16 atoms are in the generated .gro and .top files. Have you met this strange thing? Or tell me what I should do with it?

Best regards,
Chaofu Wu
xiaowu759 at hotmail.com
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