[gmx-users] how to merge the protein and lipid bilayer in a cell?

Justin A. Lemkul jalemkul at vt.edu
Mon Mar 23 11:48:02 CET 2009

li ming wrote:
> Hi! All..
> I wanna do the simulation on the translocation of protein in the lipid 
> bilayer, but how can I  insert protein into lipid bilayer, and keep the 
> protein on the on the top of the center of lipid bilayer? Maybe I need 
> some detailed steps to achieve this goal, for I am a novice of gromacs 
> software...

Use editconf -center to define the appropriate center for each species within 
the same box size.  Then concatenate the files and clean up the extra headers 
and box information.


> Any involved comment is appreciated. Thanks a lot!!!
>    Ming
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Justin A. Lemkul
Graduate Research Assistant
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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