[gmx-users] How to make pdb file of whole trajectory

Mark Abraham Mark.Abraham at anu.edu.au
Wed Mar 25 10:35:47 CET 2009

Bhawana Gupta wrote:
> Hello everyone,
> Thankyou for the reply for my previous message.
> But sorry to say
> I didn't get, what you want to say.
> Please tell me in elaborated way.
> I will be thankful.

Your example commands look like you already have a trajectory file with 
the whole trajectory. Use trjconv if you just want to convert from one 
format to another.

David thinks you are asking how to get a separate PDB file for each 
frame. If not, please explain further.


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