[gmx-users] How to make pdb file of whole trajectory

[Mark Abraham]

Bhawana Gupta wrote:
> Hello everyone,
>  
> Thankyou for the reply for my previous message.
> But sorry to say
> I didn't get, what you want to say.
> Please tell me in elaborated way.
> I will be thankful.

Your example commands look like you already have a trajectory file with 
the whole trajectory. Use trjconv if you just want to convert from one 
format to another.

David thinks you are asking how to get a separate PDB file for each 
frame. If not, please explain further.

Mark