[gmx-users] Missing atom in residue

Justin A. Lemkul jalemkul at vt.edu
Mon Mar 30 20:33:11 CEST 2009

Jack Shultz wrote:
> Hi,
> What are some of the ways used to fix these problems? Do you manually
> manipulate these files to add missing residues or are there any
> automated methods? I tried ignoring it with -missing, which is
> probably a bad way to treat this error. Still that did not ignore the
> error. Does this require a custom script for adding atoms?
> Atom CG not found in residue ARG94 while adding hydrogens

These atoms have to be modeled in with external software, like DeepView or Modeller.



Justin A. Lemkul
Graduate Research Assistant
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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