[gmx-users] Missing atom in residue

[Justin A. Lemkul]

Jack Shultz wrote:
> Hi,
> 
> What are some of the ways used to fix these problems? Do you manually
> manipulate these files to add missing residues or are there any
> automated methods? I tried ignoring it with -missing, which is
> probably a bad way to treat this error. Still that did not ignore the
> error. Does this require a custom script for adding atoms?
> 
> Atom CG not found in residue ARG94 while adding hydrogens
> 

These atoms have to be modeled in with external software, like DeepView or Modeller.

-Justin

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Justin A. Lemkul
Graduate Research Assistant
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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