[gmx-users] pdb2gmx

[Kukol, Andreas]

You need to specify the name of your input file with the option '-f brady.pdb'

A.K.

> -----Original Message-----
> From: gmx-users-bounces at gromacs.org [mailto:gmx-users-bounces at gromacs.org]
> On Behalf Of Asmaa Elsheshiny
> Sent: 01 October 2009 11:37
> To: gmx-users at gromacs.org
> Subject: [gmx-users] pdb2gmx
>
> Dear All,
>
> I tried to use the following command line
>
> pdb2gmx -f -i brady.pdb -o brady.gro -p brady.top -ignh
>
> But  I get the following error massage
>
> File input/output error:
> eiwit.pdb
>
> So I tried to modify aminoacides.dat to include all the required aminoacids
> residues but , I failed because these files are readonly .
> So, How can I fix this problem.
>
> Cheers,
> Asmaa
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