[gmx-users] problem in loading xtc in VMD

Omer Markovitch omermar at gmail.com
Sun Oct 4 09:56:50 CEST 2009

For VMD you first load a GRO (or pdb) file, and then XTC.
The XTC file should contain _exactly_ the same number of atoms as the GRO
file. Did you save the entire system in the XTC, or just a specific part of

Koby Levy research group,
Weizmann Institute of Science.
FAX: 972-77-444-7905

On Fri, Oct 2, 2009 at 20:39, Paymon Pirzadeh <ppirzade at ucalgary.ca> wrote:

> Hello,
> I ran an NVT simulation from a minimized configuration. The simulation
> ended normally and I have a final configuration as well. But, when I
> load the initial coordinates and then I want to add data, which is the
> xtc file, nothing happens! no frames are loaded. This is while the xtc
> file has a reasonable size and when I load it individually in VMD, it
> loads the exact number of frames it should (300 frames). Is something
> wrong with my outputs or is there something with VMD. This is the second
> system I have such a problem.
> Regards,
> Payman
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