[gmx-users] option for finding forces between two groups

[Omer Markovitch]

Work with groups and an index file, and define energy_groups in the mdp file
also.
For indices, check make_ndx utility.
Omer.

Koby Levy research group,
Weizmann Institute of Science.
FAX: 972-77-444-7905
http://www.weizmann.ac.il/sb/faculty_pages/Levy/


On Fri, Oct 2, 2009 at 20:31, Pradip Biswas <biswas.pk at gmail.com> wrote:

> Hi,
> Anyone can please tell me whether there is any option in GROMACS to find
> forces between two groups (say for example, between two residues in a
> protein or between a peptide and a residue in a Protein for Protein-peptide
> interaction) or one need to workaround with the code to get that?
>
> Thanks in advance.
> Biswas.
>
>
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