[gmx-users] Installation error (gromac4.0.5)

[Justin A. Lemkul]

Nkwe Monama wrote:
> Dear all,
> 
> I have been trying to install gromacs on my IBM E1350 linux cluster (amd86_64). I've managed to run cofigure without any error but I get the following error during make step.
> 
>  mpicc -DHAVE_CONFIG_H -I. -I../../src  -I../../include -DGMXLIBDIR=\"/CHPC/home/chpc/Test/oscar/gromacs-4.0.5/share/top\" -I/CHPC/home/chpc/Test/oscar/fftw-3.1.3/include  -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops -std=gnu99 -MT grompp.o -MD -MP -MF .deps/grompp.Tpo -c -o grompp.o grompp.c
> mv -f .deps/grompp.Tpo .deps/grompp.Po
> /bin/sh ../../libtool --tag=CC   --mode=link mpicc  -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops -std=gnu99  -L//CHPC/home/chpc/Test/oscar/fftw-3.1.3/lib   -o grompp grompp.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la  -L/usr/X11/lib -lnsl -lfftw3f -lm   -lX11  
> mpicc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops -std=gnu99 -o grompp grompp.o  -L//CHPC/home/chpc/Test/oscar/fftw-3.1.3/lib ./.libs/libgmxpreprocess_mpi.a -L/usr/X11/lib ../mdlib/.libs/libmd_mpi.a /CHPC/home/chpc/Test/oscar/gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.a ../gmxlib/.libs/libgmx_mpi.a -lnsl /CHPC/home/chpc/Test/oscar/fftw-3.1.3/lib/libfftw3f.a -lm -lX11  
> /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.3/../../../../x86_64-suse-linux/bin/ld: skipping incompatible /usr/X11/lib/libX11.so when searching for -lX11
> /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.3/../../../../x86_64-suse-linux/bin/ld: skipping incompatible /usr/X11/lib/libX11.a when searching for -lX11
> /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.3/../../../../x86_64-suse-linux/bin/ld: skipping incompatible /usr/X11/lib/libX11.so when searching for -lX11
> /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.3/../../../../x86_64-suse-linux/bin/ld: skipping incompatible /usr/X11/lib/libX11.a when searching for -lX11
> /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.3/../../../../x86_64-suse-linux/bin/ld: cannot find -lX11
> collect2: ld returned 1 exit status
> make[3]: *** [grompp] Error 1
> make[3]: Leaving directory `/CHPC/home/chpc/Test/oscar/gromacs-4.0.5/src/kernel'
> make[2]: *** [all-recursive] Error 1
> 
> Please help.
> 

Having you tried configuring --without-x ?

-Justin

> Regards,
> Nkwe
> 

-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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