[gmx-users] trr file in VMD

[Mark Abraham]

Paymon Pirzadeh wrote:
> I did that but, it did not work! I just get a constant color.

At the very least you would need to choose a representation that would 
colour by velocities. I don't know whether VMD can do that, or read .trr 
velocities in the first place, however. You might be better served 
asking this question on the VMD mailing list.

Mark

> On Sun, 2009-10-11 at 18:27 -0700, Amit Choubey wrote:
>> yes you can do that by opening the gro file and then loading the .trr
>> file .
>>
>> amit
>>
>> On Sun, Oct 11, 2009 at 6:22 PM, Paymon Pirzadeh
>> <ppirzade at ucalgary.ca> wrote:
>>         Hello,
>>         How can we use the trr file in VMD? I thought since we ask in
>>         the mdp
>>         file to output the velocities, then in VMD we should be able
>>         to see
>>         molecules colored based on their velocities through the
>>         trajectory
>>         options. Am I correct?
>>         
>>         Payman
>>         
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