[gmx-users] simulation end with Segmentation fault, error message said something about libSystem.B.dylib
Mark.Abraham at anu.edu.au
Thu Oct 15 04:40:55 CEST 2009
Itamar Kass wrote:
> Lately few of my simulations had ended up with wired output:
> Writing final coordinates.
> step 500000, remaining runtime: 0 s
> [xn068:94365] *** Process received signal ***
> [xn068:94365] Signal: Segmentation fault (11)
> [xn068:94365] Signal code: Address not mapped (1)
> [xn068:94365] Failing at address: 0x108ee9000
> [xn068:94365] [ 0] 2 libSystem.B.dylib
> 0x00000000844e83fa _sigtramp + 26
> [xn068:94365] [ 1] 3 ???
> 0x0000000000801b78 0x0 + 8395640
> [xn068:94365] *** End of error message ***
> In addition, the output files are not usable. We use apple with 10.5
> (server version) and gromacs (4.0.5) is compiles using 64bit.
> Any idea someone?
What was the command line? What's the end of the .log file? What
filesystem are you using? Did it fill?
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