[gmx-users] profiles az a function of z

[Mark Abraham]

Paymon Pirzadeh wrote:
> Well, the main purpose is to average the energy or any desired property
> along any desired coordinate axis. simple binning of the box will do the
> job, but I was wondering if this can be done in general with gromacs
> post simulation tools.

No, there is no general way to do this. Individual tools might let you 
construct various analysis "groups" according to some geometric 
criterion, but in general you need to use atomic indices in .ndx files.

Mark