[gmx-users] Normal mode analysis of pure water

[simon sangma]

Hi  Justin,
                Are you suggesting that after thorough energy minimization,
seperate .mdp file is to be used for NMA? In that case how would that output
file (energy minimised file) be taken as an input file for the grompp and
mdrun command (for NMA)? What extension would the file have (.what) ?
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