[gmx-users] Protein Solvent Dynamics - Coordinates for docking

[ram bio]

Dear Gromacs Users,

I have performed a protein in solvent simulation for 1 ns, the got the
output files as: md_0_1.cpt  md_0_1.edr  md_0_1.gro  md_0_1.log
md_0_1.tpr  md_0_1.trr  md_0_1.xtc. I am following Justin Tutorial.

Can anybody tell me how to extract the coordinates ? of the simulated
protein (file after extraction ?) and is it necessary to minimize the
simulated protein in vacco to use it for further docking studies.

Please help.

Thanks,

ram