[gmx-users] scripts to generate topology CG

[Francesco Pietra]

Hello Sunny:
I had already generated a valid .itp file for my protein using
seq2itp. That .itp works for both the protein itself and the protein
graphically inserted into a bilayer. When I add graphically further
water it does not work any more. I thought there is something else
that manages water without putting it everywhere. That script does not
help.

thanks
francesco

On Wed, Oct 21, 2009 at 3:46 PM, sunny mishra <mishra.sunny at gmail.com> wrote:
> There is a seq2itp.pl script provided by martini folks in their
> website. You can get it from there.
>
> Sunny
>
> On Wed, Oct 21, 2009 at 9:42 AM, Francesco Pietra
> <francesco.pietra at accademialucchese.it> wrote:
>> Hi:
>> I am looking for scripts that generate topology in coarse grained.
>> Thanks for indications.
>>
>> francesco pietra
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