[gmx-users] Re: Inflategro for Coarse Grained

Justin A. Lemkul jalemkul at vt.edu
Thu Oct 29 21:25:48 CET 2009

sunny mishra wrote:
> Yes I did the same and when I see my system.gro file it gives me the 
> dimensions of the protein box half of the lipid bilayer box so that 
> means it should now be set in the center of the lipid bilayer. But after 

I don't understand what you mean.

> that when I run the inflategro script and see my output file the protein 
> and lipid are separated and I dnt know why?

Can you post the actual commands you're using?



Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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