[gmx-users] Re: Inflategro for Coarse Grained

[Justin A. Lemkul]

sunny mishra wrote:
> Yes I did the same and when I see my system.gro file it gives me the 
> dimensions of the protein box half of the lipid bilayer box so that 
> means it should now be set in the center of the lipid bilayer. But after 

I don't understand what you mean.

> that when I run the inflategro script and see my output file the protein 
> and lipid are separated and I dnt know why?
> 

Can you post the actual commands you're using?

-Justin

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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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