[gmx-users] Re: Segmentation fault
Mark.Abraham at anu.edu.au
Tue Sep 1 07:28:26 CEST 2009
> I meet a problem, that is "segmentation fault." And this
> "segmentation fault" comes out when I heat my system, the step "grompp -f
> heat_water.mdp -c...-n ...-p ...-o ...". The original signs are as
> processing topology...
> Opening library file /usr/local/gromacs/share/gromacs/top/ff_dum.itp
> Generated 222 of the 2415 non-bonded parameter combinations
> Segmentation fault
> I wish someone can help me solve this promblem. Thanks a lot!
"Segmentation fault" is a generic indication of something going
catastrophically wrong. If grompp works on other library files (go and
test it if necessary!) then you've probably mis-formatted ff_dum.itp and
need to compare it with the correct ones and/or the information in
chapter 5 of the manual.
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