[gmx-users] analysis of membrane protein

[Samik Bhattacharya]

hi all,
i have simulated a membrane protein system in DPPC and DMPC bilayer. i have got the trajectories and analysed them with the gromacs tools. now i want to get the bonding connectivity of the protein with that of the lipid layer. can i get that graphically (i.e. in xvg format) ? is there any option to visualize the protein - lipid connections other than ngmx? as the system is big enough i cant get a clear idea about the bonding patterns of the protein with the lipid bilayer....waiting for suggestions....
Thank You all
Shamik



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