[gmx-users] bypassing pdb2gmx

[Mark Abraham]

Amit Choubey wrote:
> hi everyone,
> I have a pdb file of my system and i want it to be fed into the GROMACS
> software. I have a new force field for the simulation and i have made the
> .top file manually which includes the new library FF files. I need to get a
> .gro file from the .pdb file that i have. 

No, you don't. 
http://oldwiki.gromacs.org/index.php/Coordinate_File#On_the_need_for_a_.gro_file

Mark

> So, is there a way out to do this
> without incorporating pdb2gmx because i dont use the standard FF and i dont
> really have all the other datafiles for the new FF except for necessary bond
> and nonbonded infos.
> 
> Amit
> 
> 
> 
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