[gmx-users] compiling problem

Mark Abraham Mark.Abraham at anu.edu.au
Wed Sep 16 08:40:45 CEST 2009


Yang Ye wrote:
> Is LAM-MPI's binary in PATH? if you run mpicc from console, will it also
> show "No such file or directory"? Check LAM-MPI installation.

Does 4.0.5 compile under the same conditions as the failure below?

Mark

> On Wed, Sep 16, 2009 at 12:39 PM, Mu Yuguang (Dr) <YGMu at ntu.edu.sg> wrote:
> 
>> Hi,
>> I use
>> git clone git://git.gromacs.org/gromacs.git
>>
>> to get the lastest version
>> and
>> ./bootstrap
>>
>> To generate the configure file
>> Then use ./configure successfully
>>
>> Howeve, after make
>> The error appears as foloowing:
>>
>>
>> mpicc -DHAVE_CONFIG_H -I. -I. -I../../../../src -I/usr/X11R6/include
>> -I/usr/include/libxml2 -I../../../../include
>> -DGMXLIBDIR=\"/home/ygmu/software/gmx_cvs/gromacs/share/top\"
>> -I/home/ygmu/software/fftw-3.2/float/include -O3 -fomit-frame-pointer
>> -finline-functions -Wall -Wno-unused -msse2 -funroll-all-loops -std=gnu99
>> -MT nb_kernel400_x86_64_sse.lo -MD -MP -MF .deps/nb_kernel400_x86_64_sse.Tpo
>> -c nb_kernel400_x86_64_sse.c -o nb_kernel400_x86_64_sse.o
>> nb_kernel400_x86_64_sse.c: In function `nb_kernel400_x86_64_sse':
>> nb_kernel400_x86_64_sse.c:93: warning: implicit declaration of function
>> `_mm_castsi128_ps'
>> nb_kernel400_x86_64_sse.c:93: error: invalid initializer
>> nb_kernel400_x86_64_sse.c:94: error: invalid initializer
>> nb_kernel400_x86_64_sse.c:95: error: invalid initializer
>> mpicc: No such file or directory
>> make[5]: *** [nb_kernel400_x86_64_sse.lo] Error 1
>>
>> Regards
>>
>> Yuguang
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> 
> 
> 
> 
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