[gmx-users] butane-parameters
rversace at ccny.cuny.edu
rversace at ccny.cuny.edu
Thu Sep 17 20:36:40 CEST 2009
Hi Everybody:
I am trying to perform a MD simulation of n-butane. But I cannot find the gromacs paramaters for it. In the 2005 paper from Lange about Flooding in GROMACS (J.Comp.Chem 21:1693.2006), the authors performed this simulation before using the ffgmx united atom force field. But I cannot find the butane topology and parameters inside that forcefield.
When I use pdb2gmx on my butane.pdb I get the following message:
-------------------------------------------------------
Program pdb2gmx, VERSION 4.0.4
Source code file: resall.c, line: 426
Fatal error:
Residue 'BUT' not found in residue topology database
-------------------------------------------------------
Does anybody know where can it be or maybe it has another residue name in the rtp file?
Thanks
More information about the gromacs.org_gmx-users
mailing list