[gmx-users] dssp programm

[Justin A. Lemkul]

subarna thakur wrote:
> Hello
> I installed the dssp program for obtaining the secondary structure.I 
> used the dssp programm to analyze the secondary structure of the protein 
> after a MD simulation run. I got the out of the pogramm as m.dssp but I 
> want to know how do I represent the output of the dssp programm 
> graphically or how do I visualize the output of the dssp programm.
>  

If you are using dssp as a standalone executable, you'll just get a text file 
with some statistics.  If you want the nice pictures you see in publications, 
you have to use do_dssp, which acts as an interface to dssp, and can be used 
with trajectories.

-Justin

> regards
> subarna
> 
> ------------------------------------------------------------------------
> Connect more, do more and share more with Yahoo! India Mail. Learn more 
> <http://in.rd.yahoo.com/tagline_galaxy_3/*http://in.overview.mail.yahoo.com/>.
> 
> 
> ------------------------------------------------------------------------
> 
> _______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the 
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php

-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================