[gmx-users] the LINCS and SETTLE constraint connection matrices are mass weighted

lina zhao0139 at ntu.edu.sg
Thu Apr 1 11:28:47 CEST 2010


Hi, 

What does this mean?

Program mdrun, VERSION 4.0.7
Source code file: constr.c, line: 243

Software inconsistency error:
constrain called for forces while not doing energy minimization, can not
do this while the LINCS and SETTLE constraint connection matrices are
mass weighted

Below is part of the .mdp file. I do not know which part is wrong cause
it's hard for me to understand the error they described.

; Parameters describing what to do, when to stop and what to save
integrator      = nm        
constraints     = hbonds
emtol           = 1000.0       
emstep          = 0.01          
nsteps          = 500           

nstlist         = 1             
ns_type         = grid          
rlist           = 0.3           
coulombtype     = Switch      
vdwtype         = Switch
rcoulomb        = 0.1           
rvdw            = 0.1          
pbc             = xyz         

Thanks for any explanations.

lina



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