[gmx-users] DSSP=> how to edit .eps file
chihying2008 at gmail.com
Sun Apr 4 06:40:00 CEST 2010
1. dssp -n index.ndx
=> only atom numbers of one residue in the index.ndx
=> can dssp decide the exact second structure for the only one residue
without considering other residues of protein?
=> can i get the same second structure for the residue with [ dssp -n
one-residue.ndx ] and [dssp -n protein-main chain + H .ndx ] ?
2. The legend indicates the color of different second structure is shown
under the secondary-structure plot.
I don't want to change the colors assigned, but one legend is
half-shown. The picture of legend is cut.
How can I get that legend full-shown.
3. With the option
-sss string HE
HE = helix ?
-------------- next part --------------
An HTML attachment was scrubbed...
More information about the gromacs.org_gmx-users