[gmx-users] dssp FATAL ERROR.

[Justin A. Lemkul]

vivek modi wrote:
> hi,
> 
> Although this is already discussed in the mailing list but none of the 
> solutions mentioned helped me.
> 
> I am using Gromacs-4.0.5. I downloaded dssp 
> from http://swift.cmbi.ru.nl/gv/dssp/HTML/dsspcmbi
> Then I copy this to /usr/local/bin & chmod to executable.
> But when I run the program do_dssp it gives the following error:
> 
> 
> Program do_dssp_4, VERSION 4.0.5
> Source code file: do_dssp.c, line: 471
> 
> Fatal error:
> Failed to execute command: /usr/local/bin/dssp -na ddXnSQTc ddgMjECf > 
> /dev/null 2> /dev/null
> 
> Any help is appreciated.
> 

Did you re-name the executable?  Have you set the DSSP environment variable 
properly?

-Justin

> 
> Thanks.
> 
> Vivek Modi,
> Graduate Student, IITK.
> 
> 

-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================