[gmx-users] Simulation of only Lipid Bilayer

Arun kumar V arun.target at gmail.com
Tue Apr 6 13:20:23 CEST 2010


Try PRODRG server to build the molecule as well as to get topology file. 
Though  you might have to be careful in using this topology file.

Arun

Saumya wrote:
> Hi all,
>
> Well, I have been trying to make lipid bilayers using genconf of
> gromacs from a single lipid molecule.
> Can anyone tell me how to proceed with the simulation of lipid
> bilayers starting with a single lipid molecule?
> How can I obtain the .pdb file for a lipid?
> Is there any manual that describes the procedure using Gromacs?
>
> Hoping for some inputs.
>
> Regards
> Saumya
>   




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