[gmx-users] hou to Construct the oil/water interface

Mark Abraham Mark.Abraham at anu.edu.au
Sat Apr 10 08:37:17 CEST 2010

On 10/04/2010 12:09 PM, kecy_wu at sina.com wrote:
>   Hello, I want to construct the oil/water interface, like this: X and Y
> axises of the box are 5 nm, Z axis is 10 nm. 0-5 nm of Z axis in the box
> is water, and 5-10 nm of Z axis in the box is oil (for example
> :dodecane), how can I achieve the aim?

Preferably, find a pre-equilibrated box of dodecane and use genconf and 
editconf suitably on that and a box of water.


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