[gmx-users] construct CG membrane protein and CG membrane and inflategro.pl

Justin A. Lemkul jalemkul at vt.edu
Mon Apr 12 14:42:43 CEST 2010

xi zhao wrote:
> Dear Gromacs users:
> I use inflateGRO.pl to insert CG protein in to CG POPC membrane, but 
> when carryied EM with Strong POStion REStraint, the protien and membrane 
> were apart. Please help me!

What does "apart" mean?  If you want free help, you have to make it easy to help 
you.  That means thorough descriptions of what you're doing, what you're seeing, 
and if necessary, posting images online (not as attachments!) for us to take a 
look.  The InflateGRO method should generate a configuration that has molecules 
separated by a large amount of space, but if there is something else wrong 
you'll have to provide a better description.


> 4 
> <http://cn.webmessenger.yahoo.com/index.php?t=1&to=eWlkPXpoYW94aWl0YzIwMDI-&sig=703fa929658518b2720b087c59cd85f2dabf8844>


Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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