[gmx-users] construct CG membrane protein and CG membrane and inflategro.pl

[Mark Abraham]

On 12/04/2010 10:37 PM, xi zhao wrote:
>
>
> Dear Gromacs users:
> I use inflateGRO.pl to insert CG protein in to CG POPC membrane, but
> when carryied EM with Strong POStion REStraint, the protien and membrane
> were apart. Please help me!

Either you put them apart, or you're seeing a periodicity artefact. See 
http://www.gromacs.org/Documentation/Terminology/Periodic_Boundary_Conditions

Mark