[gmx-users] How to remove overlapping lipid residues?

XAvier Periole x.periole at rug.nl
Thu Apr 15 10:29:03 CEST 2010

There are gmx tools that explicitly do this. Either you determine which
lipid to remove using a visualization tool like VMD and remove the
lipids by editing the gro/pdb file, either you use on of the tools  
with gmx to insert a protein a membrane bilayer.

on the gmx tutorials:

one from G. Groenhof group:

On Apr 15, 2010, at 9:32 AM, Jignesh Patel wrote:

> Hello,
> Can anyone tell me how to remove overlapping lipid residues?
> Thanking you.
> -- 
> Best Wishes,
> Jignesh Patel
> Pharmacoinformatics,
> -- 
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