[gmx-users] How to remove overlapping lipid residues?

[XAvier Periole]

There are gmx tools that explicitly do this. Either you determine which
lipid to remove using a visualization tool like VMD and remove the
lipids by editing the gro/pdb file, either you use on of the tools  
associated
with gmx to insert a protein a membrane bilayer.

on the gmx tutorials:
http://www.gromacs.org/Documentation/How-tos/Membrane_Simulations

one from G. Groenhof group:
http://wwwuser.gwdg.de/~ggroenh/membed.html

On Apr 15, 2010, at 9:32 AM, Jignesh Patel wrote:

>
> Hello,
>
> Can anyone tell me how to remove overlapping lipid residues?
>
> Thanking you.
> -- 
> Best Wishes,
> Jignesh Patel
> Pharmacoinformatics,
> NIPER
> -- 
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