[gmx-users] simulated annealing

leila karami karami.leila1 at gmail.com
Wed Apr 21 13:20:09 CEST 2010


Dear Justin
thanks for your attention

I want to use simulated annealing to obtain global minimum for protein-dna
structure. I will do first heating and then slowly cooling.

is my mdp file true, now?

T-couple = brendsen

ref-t = 300

annealing: single

annealing_npoints: 5

annealing_time: 0  3  6  9  12

annealing_temp: 150  650  600  550  500  450  400  350  300

Best regards.
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