[gmx-users] Cutoff value during lipid shrinking using inflategro.pl script

[Jignesh Patel]

Hello all,

I am trying to do shrinking of lipids using inflategro.pl script. So anyone
can suggest me *how much cut off value* should I give to remove overlapped
lipid residues. I have to give *cutoff from starting step or at final
step*of shrinking.

perl    inflategro.pl    confout.gro    0.95    DPPC *   0   *
system_shrink1.gro
    5      area_shrink1.dat

Thanking You in anticipation.

-- 
Best Wishes,
Jignesh Patel
M.S.(Pharm.),
Center for Pharmacoinformatics,
NIPER,
S.A.S. Nagar,
India
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