[gmx-users] Install error for gmx-4.5_beta1

[Justin A. Lemkul]

Roland Schulz wrote:
> Hi,
> 
> in general running in parallel (-j) doesn't help for install. I suggest 
> to use -j only for "make" and not for "make install"
> 

Ah, foolish of me.  I got carried away with my copy and paste.  Thanks.

-Justin

> Roland
> 
> On Fri, Jul 30, 2010 at 3:38 PM, Justin A. Lemkul <jalemkul at vt.edu 
> <mailto:jalemkul at vt.edu>> wrote:
> 
> 
>     Hi,
> 
>     Thanks to the developers for the release of the 4.5 beta.
>      Unfortunately, I'm having a minor issue getting it to install.  My
>     system is Mac OSX 10.5.8 (Intel), gcc 4.0.1, fftw 3.0.1.
>      Installation procedure:
> 
>     $ ./configure --prefix=/usr/local/gmx_4.5_beta1 --with-gsl
>     CPPFLAGS="-I/usr/local/fftw/include -I/sw/include"
>     LDFLAGS="-L/usr/local/fftw/lib -L/sw/lib"
> 
>     $ make -j 2
> 
>     $ sudo make -j 2 install
> 
>     Error message:
> 
>     Making install in gmxdemo
>     make[4]: Nothing to be done for `install-exec-am'.
>     test -z "/usr/local/gmx_4.5_beta1/share/gromacs/tutor/gmxdemo" ||
>     ../../../config/install-sh -c -d
>     "/usr/local/gmx_4.5_beta1/share/gromacs/tutor/gmxdemo"
>     test -z "/usr/local/gmx_4.5_beta1/share/gromacs/tutor/gmxdemo" ||
>     ../../../config/install-sh -c -d
>     "/usr/local/gmx_4.5_beta1/share/gromacs/tutor/gmxdemo"
>     mkdir: /usr/local/gmx_4.5_beta1/share/gromacs/tutor/gmxdemo: File exists
>     make[4]: *** [install-gmxdemoSCRIPTS] Error 1
>     make[4]: *** Waiting for unfinished jobs....
>      /usr/bin/install -c -m 644 cpeptide.pdb
>     '/usr/local/gmx_4.5_beta1/share/gromacs/tutor/gmxdemo'
>     make[3]: *** [install-am] Error 2
>     make[2]: *** [install-recursive] Error 1
>     make[1]: *** [install-recursive] Error 1
>     make: *** [install-recursive] Error 1
> 
> 
>     The funny part is that if I re-issue the exact same make install
>     command as above, the process completes.  Is the issue related to
>     the duplicate "test -z" lines shown above?
> 
>     -Justin
> 
>     -- 
>     ========================================
> 
>     Justin A. Lemkul
>     Ph.D. Candidate
>     ICTAS Doctoral Scholar
>     MILES-IGERT Trainee
>     Department of Biochemistry
>     Virginia Tech
>     Blacksburg, VA
>     jalemkul[at]vt.edu <http://vt.edu> | (540) 231-9080
>     http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
> 
>     ========================================
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> 
> 
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-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================