[gmx-users] pdb file

[Justin A. Lemkul]

leila karami wrote:
> Hi gromacs users
> 
> I obtained pdb input file for gromacs from STRAP program. this pdb
> file coantains protein and dna. this pdb file was obtaind form
> superposition of 2 other pdb files. there is one problem: when I see
> pdb file obtained from STRAP program by VMD, some bonds are
> disappeared whereas when I open same file by text editor all things
> are normal.as I can not attached this pdb file, I put residues 10-40
> corresponding to protein from pdb.
> 
> please guide me

http://www.gromacs.org/index.php?title=Download_%26_Installation/Related_Software/Visualization_Software#Topology_bonds_vs_Rendered_bonds

-Justin

-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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