[gmx-users] How to calculate the distances

[Mark Abraham]

----- Original Message -----
From: #ZHAO LINA# <ZHAO0139 at e.ntu.edu.sg>
Date: Thursday, August 26, 2010 15:17
Subject: [gmx-users] How to calculate the distances
To: "gmx-users at gromacs.org" <gmx-users at gromacs.org>


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 >  Hi all,
 > 
>  I guess the question I'm going to ask probably is a bit simple to those who know, well. After MD, I got a dimer, how could I get the distance of those two proteins, the centre of mass distance. In this simulation, there were six involved, but I only want to  calculate the two of them.

Probably g_dist. See section 7.4 of the manual for some clues, and then the man pages of the individual tools for more information.

Mark
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