[gmx-users] RE: Molecule out of pbc box

Justin A. Lemkul jalemkul at vt.edu
Thu Aug 26 16:18:52 CEST 2010

Nimesh Jain wrote:
> Hi,
> Does anyone know if there is a way to put a molecule back in the pbc box 
> in gromacs. I am visualizing my sims in vmd and the molecule keeps going 
> out of the box. Is it normal or an artifact in vmd, is there a way to 
> put the molecule back in the box? please let me know.

FAQ #11:



> Thanks,
> Nimesh


Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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