[gmx-users] deletion of some water molecules

leila karami karami.leila1 at gmail.com
Tue Aug 31 14:48:04 CEST 2010

Dear gromacs users

I did simulation of protein-dna complex in a box with size 7,7,7. There are
5000 water molecule in this box. After full md simulation, I need a pdb or
gro file containing only water molecules being exactly environment of pr-dna
complex and not water molecules being in edges or rest of box.

Is there any way to do that?
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