[gmx-users] Can't build gromacs-4.5.3 with cmake

[Justin A. Lemkul]

Keith Callenberg wrote:
> I am running cmake version 2.8.0 on Ubuntu 10.04 64-bit with gcc 4.4.3.
> 
> ~/apps/gromacs-4.5.3$ cmake -version
> cmake version 2.8.0
> 

Does it make a difference if you build outside the source tree (as is recommended)?

http://www.gromacs.org/Developer_Zone/Cmake#Using_CMake

-Justin

> Thanks,
> Keith
> 
>> What cmake version are you using?
>>
>> On Wed, Dec 8, 2010 at 9:49 AM, Keith Callenberg <kmc112 at pitt.edu> wrote:
>>> Hello gmx-users,
>>>
>>> I am trying to build gromacs-4.5.3 with GPU support with OpenMM. I
>>> have followed the INSTALL-GPU instructions along with the tips given
>>> in this post:
>>> http://www.mail-archive.com/gmx-users@gromacs.org/msg34139.html
>>>
>>> However, I am receiving the following error from cmake even without
>>> the -DGMX_OPENMM=ON flag (and I have been making sure to rm
>>> CMakeCache.txt and src/CMakeCache.txt):
>>>
>>> user at host:~/apps/gromacs-4.5.3$ cmake src/
>>> -- The C compiler identification is GNU
>>> -- The CXX compiler identification is GNU
>>> -- Check for working C compiler: /usr/bin/gcc
>>> -- Check for working C compiler: /usr/bin/gcc -- works
>>> -- Detecting C compiler ABI info
>>> -- Detecting C compiler ABI info - done
>>> -- Check for working CXX compiler: /usr/bin/c++
>>> -- Check for working CXX compiler: /usr/bin/c++ -- works
>>> -- Detecting CXX compiler ABI info
>>> -- Detecting CXX compiler ABI info - done
>>> -- Found assembler: /usr/bin/as
>>> -- Loaded CMakeASM-ATTInformation - ASM-ATT support is still
>>> experimental, please report issues
>>> CMake Error at gmxlib/CMakeLists.txt:146 (set_target_properties):
>>>  set_target_properties called with incorrect number of arguments.
>>>
>>>
>>> CMake Error at gmxlib/CMakeLists.txt:148 (install):
>>>  install TARGETS given no ARCHIVE DESTINATION for static library target
>>>  "gmx".
>>>
>>>
>>> CMake Error at mdlib/CMakeLists.txt:11 (set_target_properties):
>>>  set_target_properties called with incorrect number of arguments.
>>>
>>>
>>> CMake Error at mdlib/CMakeLists.txt:13 (install):
>>>  install TARGETS given no ARCHIVE DESTINATION for static library target
>>>  "md".
>>>
>>>
>>> CMake Error at kernel/CMakeLists.txt:42 (set_target_properties):
>>>  set_target_properties called with incorrect number of arguments.
>>>
>>>
>>> CMake Error at kernel/CMakeLists.txt:108 (install):
>>>  install TARGETS given no ARCHIVE DESTINATION for static library target
>>>  "gmxpreprocess".
>>>
>>>
>>> CMake Error at kernel/CMakeLists.txt:109 (install):
>>>  install TARGETS given no RUNTIME DESTINATION for executable target
>>> "mdrun".
>>>
>>>
>>> CMake Error at kernel/CMakeLists.txt:110 (install):
>>>  install TARGETS given no RUNTIME DESTINATION for executable target
>>>  "grompp".
>>>
>>>
>>> CMake Error at tools/CMakeLists.txt:36 (set_target_properties):
>>>  set_target_properties called with incorrect number of arguments.
>>>
>>>
>>> CMake Error at tools/CMakeLists.txt:65 (install):
>>>  install TARGETS given no ARCHIVE DESTINATION for static library target
>>>  "gmxana".
>>>
>>>
>>> CMake Error at tools/CMakeLists.txt:66 (install):
>>>  install TARGETS given no RUNTIME DESTINATION for executable target
>>>  "do_dssp".
>>>
>>>
>>> CMake Warning (dev) in CMakeLists.txt:
>>>  No cmake_minimum_required command is present.  A line of code such as
>>>
>>>   cmake_minimum_required(VERSION 2.8)
>>>
>>>  should be added at the top of the file.  The version specified may be
>>> lower
>>>  if you wish to support older CMake versions for this project.  For more
>>>  information run "cmake --help-policy CMP0000".
>>> This warning is for project developers.  Use -Wno-dev to suppress it.
>>>
>>> -- Configuring incomplete, errors occurred!
>>>
>>> Here are my environment variables:
>>>
>>> PATH=/usr/local/cuda/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
>>>
>>> LD_LIBRARY_PATH=/usr/local/cuda/lib64:/usr/local/cuda/lib:/usr/local/openmm/lib:
>>>
>>> The variable that seems to be empty in CMakeLists.txt is
>>> ${LIB_INSTALL_DIR}. Does anyone know what that might be caused by?
>>>
>>> Thank you,
>>> Keith Callenberg
>>> --
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>>>
>>>
> 
>>
>> --
>> ORNL/UT Center for Molecular Biophysics cmb.ornl.gov
>> 865-241-1537, ORNL PO BOX 2008 MS6309

-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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