[gmx-users] Segmentation fault in g_hbond

[Erik Marklund]

Hi,

Upgrade to 4.5.x and see if the problem persists. I've hacked g_hbond 
quite a bit since 4.0.5.

Erik

leila karami skrev 2010-12-18 14.02:
> Dear gromacs users
>
> I'm using gromacs 4.0.5. with following command:
>
> g_hbond -f .xtc -s .tpr -n .ndx -num -g -hbn.
>
> my system contains protein, dna and water.
>
> when I use above command for protein and dna, there is no problem. 
> segmentation fault is only for protein and water.
>
> -- 
> Leila Karami
> Ph.D. student of Physical Chemistry
> K.N. Toosi University of Technology
> Theoretical Physical Chemistry Group
>


-- 
-----------------------------------------------
Erik Marklund, PhD student
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,    75124 Uppsala, Sweden
phone:    +46 18 471 4537        fax: +46 18 511 755
erikm at xray.bmc.uu.se    http://folding.bmc.uu.se/