[gmx-users] simulation of membrane protein

[Sarath Chandra Dantu]

On Wed, Dec 22, 2010 at 11:23 AM, shikha agarwal <shikhaiiitabi at gmail.com>wrote:

> I am trying to simulate a theorical model of a membrane protein in explicit
>     lipid bilayer membrane environment (DMPC or POPC), I have the pdb
>     files of this protein and membrane , I have to topolies files this
>     lipids (dmpc.ip or popc.itp).
>    How we can create merged topology of lipid and protein and do simulation
>    step by step.
>

Do you want to embed the protein in the lipid membrane? For that you can use
g_membed. For a step-by-step How to do membrane simulation refer to the link
below....


http://www.gromacs.org/Documentation/How-tos/Membrane_Simulations


Best Wishes,


Sarath




>    Anybody could help ?
>     thank you very much !
>
>
> with regards :
> shikha agarwal
> IIIT-A
>
> --
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20101222/ab82d213/attachment.html>