[gmx-users] Re: Minimum simulation time needed to have a completely minimized structure

bharat gupta bharat.85.monu at gmail.com
Wed Feb 10 16:17:20 CET 2010

Hi all

I wanna know that for how long shall I run the energy minimization
step to minimize my modelled protein structure .. and what all
parameters shall I look for the minimized structure - rms , rmsf ,
potential , g_energy . In g_energy total energy and potential both
have to be checked ...

M.Sc. Bioinformatics (Final year)
Centre for Bioinformatics
Pondicherry University
Mob. +919962670525

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