[gmx-users] Re: Minimum simulation time needed to have a completely minimized structure

[bharat gupta]

Hi all

I wanna know that for how long shall I run the energy minimization
step to minimize my modelled protein structure .. and what all
parameters shall I look for the minimized structure - rms , rmsf ,
potential , g_energy . In g_energy total energy and potential both
have to be checked ...

-- 
Bharat
M.Sc. Bioinformatics (Final year)
Centre for Bioinformatics
Pondicherry University
Puducherry
India
Mob. +919962670525