[gmx-users] problem with the translate option of editconf

Ozge Engin ozge.engin at gmail.com
Mon Feb 15 14:34:45 CET 2010

Hi all,

I am trying to translate the peptide within the simulation box. I have a box
with dimensions of 3.8 3.0 3.0 nm^3, and I want to put the peptide on top of
the box. In order to that I used the following command line:

editconf -f pep.pdb -box 3.8 3.0 3.0 -translate 0 0 1.5 -o trans.pdb

The peptide is not translated, but sitting at the center of the box. Why is
the case? Any suggestions?

Thanks in advance

Ozge Engin
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20100215/ab56e3e6/attachment.html>

More information about the gromacs.org_gmx-users mailing list