[gmx-users] problem with the translate option of editconf

[Ozge Engin]

Hi all,

I am trying to translate the peptide within the simulation box. I have a box
with dimensions of 3.8 3.0 3.0 nm^3, and I want to put the peptide on top of
the box. In order to that I used the following command line:

editconf -f pep.pdb -box 3.8 3.0 3.0 -translate 0 0 1.5 -o trans.pdb

The peptide is not translated, but sitting at the center of the box. Why is
the case? Any suggestions?

Thanks in advance

-- 
Ozge Engin
★☆
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