[gmx-users] Normal Mode analysis

Justin A. Lemkul jalemkul at vt.edu
Sat Feb 20 12:49:17 CET 2010

Ajit Datta wrote:
> Hello everyone,
>           I am trying to do normal mode analysis for a protein using Gromacs. Can anyone point me out towards a sample mdp file that I could edit for this purpose?

There are some general pointers here:


Aside from that, search the literature; published papers should have 
reproducible methodology :)


> Thanks
> Ajit B.


Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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