[gmx-users] Normal Mode analysis

[Justin A. Lemkul]

Ajit Datta wrote:
> Hello everyone,
>           I am trying to do normal mode analysis for a protein using Gromacs. Can anyone point me out towards a sample mdp file that I could edit for this purpose?

There are some general pointers here:

http://www.gromacs.org/Documentation/How-tos/Normal_Mode_Analysis

Aside from that, search the literature; published papers should have 
reproducible methodology :)

-Justin

> Thanks
> 
> Ajit B.

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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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