[gmx-users] Coarse grain simulation.

Mark Abraham Mark.Abraham at anu.edu.au
Mon Feb 22 07:53:34 CET 2010

On 22/02/2010 5:40 PM, Sarath Kumar wrote:
> Can Anybody please tell me how to do Coarse grain simulation for proteins.

They have - it's in tutorial form. :-)

> I refered the Martini tutorial for Coarse grain
> I started with the Bilayer simulation for lipid.
> But i m unable to follow them,
> I m getting the error number of atoms not matching, when i do the grompp
> for EM,

Well, that means either the tutorial is wrong (and you're the first to 
notice it), or you haven't followed it well enough. It's pretty likely 
the problem is what you've done. We can't possibly guess what that was, 


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