[gmx-users] NVE of water
Andrea
andreamuntean at gmail.com
Sun Feb 28 21:25:37 CET 2010
Dear users,
for test purposes in order to set up a bigger system, I try to run NVE
simulations of SPC water, but the energy increases very rapidely. My guess
is that the cutoffs I use are not good for water. I that the case ( I would
be grateful for a good reference for suitable SPC water parameters) or do I
miss something else?
My parameter file for the NVE is:
title = NVE
cpp = /lib/cpp
integrator = md
dt = 0.002 ; ps ! = 2 fs
nsteps = 50000 ; total 100 ps
nstxout = 5000
nstvout = 5000
nstxtcout = 0
nstlog = 5000
nstenergy = 5000
nstlist = 10
ns_type = grid
rlist = 1.1
unconstrained-start = yes
constraints = all-bonds
constraint_algorithm = shake
shake_tol = 0.0001
;VdW
vdwtype = Switch
rvdw = 1.0 ; rvdw+ (0.1:0.3)= rlist
rvdw_switch = 0.9
gen_vel = no ; yes
gen_temp = 300
gen_seed = -1
;Temperature coupling
tc_grps = system
tcoupl = no ;nose-hoover
tau_t = 0.1
ref_t = 300
;Pressure coupling
pcoupl = no
optimize_fft = yes
Any suggesions are really welcome.
Thank you.
Regards,
Andrea Muntean
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