[gmx-users] installation on mac os x snow leopard

[Valentina Tozzini]

dear all
has anybody tried to install gromax (vs 4.0.7) on mac os x snow leopard (10.6.2)?
I have the following problem: the configure script does not work. As you can see from the log (below) the configure error is 

configure: error: Cannot find fftw3f library

however, I believe the fftw3f libraries are installed on my mac. I have done it with fink, and the command 
>fink list fftw 

gives as output

 i   fftw                     2.1.5-1015         Discrete Fourier Transform Library
     fftw-mpi                 2.1.5-1015         Discrete Fourier Transform Library
     fftw-mpi-shlibs          2.1.5-1015         Discrete Fourier Transform Library
 i   fftw-shlibs              2.1.5-1015         Discrete Fourier Transform Library
 i   fftw3                    3.2.2-1            Discrete Fourier Transform Lib (Ver 3)
 i   fftw3-shlibs             3.2.2-1            Discrete Fourier Transform Lib (Ver 3)


thus it seems that they are installed.

thus, I conclude that they are there but not in the right place... but I don't know how to find them and how to make the installation work.
can anybody help me?


=====================================================================
checking build system type... i386-apple-darwin10.2.0
checking host system type... i386-apple-darwin10.2.0
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... config/install-sh -c -d
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking how to create a ustar tar archive... gnutar
checking for cc... cc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of cc... gcc3
checking dependency style of cc... gcc3
checking how to run the C preprocessor... cc -E
checking whether cc accepts -O3... yes
checking whether cc accepts -funroll-all-loops... yes
checking whether cc accepts  -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops... yes
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether byte ordering is bigendian... no
checking for int... yes
checking size of int... 4
checking for long int... yes
checking size of long int... 8
checking for long long int... yes
checking size of long long int... 8
checking for off_t... yes
checking size of off_t... 8
checking that size_t can hold pointers... yes
checking floating-point format... IEEE754 (little-endian byte and word order)
checking for a BSD-compatible install... /usr/bin/install -c
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking for a sed that does not truncate output... /usr/bin/sed
checking for ld used by cc... /usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld
checking if the linker (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) is GNU ld... no
checking for /usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm
checking how to recognise dependent libraries... pass_all
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking how to run the C++ preprocessor... g++ -E
checking the maximum length of command line arguments... 196608
checking command to parse /usr/bin/nm output from cc object... ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
checking if cc supports -fno-rtti -fno-exceptions... no
checking for cc option to produce PIC... -fno-common
checking if cc PIC flag -fno-common works... yes
checking if cc static flag -static works... no
checking if cc supports -c -o file.o... yes
checking whether the cc linker (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin10.2.0 dyld
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by g++... /usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld
checking if the linker (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) is GNU ld... no
checking whether the g++ linker (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fno-common
checking if g++ PIC flag -fno-common works... yes
checking if g++ static flag -static works... no
checking if g++ supports -c -o file.o... yes
checking whether the g++ linker (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin10.2.0 dyld
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for _LARGEFILE_SOURCE value needed for large files... no
checking for sqrt in -lm... yes
checking for fftw3.h... yes
checking for main in -lfftw3f... no
configure: error: Cannot find fftw3f library



~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Valentina Tozzini
NEST-INFM-CNR,     Scuola Normale Superiore
Piazza San Silvestro, 12   -  56127 Pisa (PI) - Italy

Phone: +39 050 509 433    Fax: +39 050 509 417
Email: tozzini at nest.sns.it    Web: www.nest.sns.it/tozzini
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~