[gmx-users] installation on mac os x snow leopard
Valentina Tozzini
tozzini at nest.sns.it
Thu Jan 7 14:29:02 CET 2010
thank you, it worked.
On Jan 7, 2010, at 12:20 PM, Erik Marklund wrote:
> Valentina Tozzini skrev:
>> dear all
>> has anybody tried to install gromax (vs 4.0.7) on mac os x snow leopard (10.6.2)?
>> I have the following problem: the configure script does not work. As you can see from the log (below) the configure error is
>> configure: error: Cannot find fftw3f library
>>
>> however, I believe the fftw3f libraries are installed on my mac. I have done it with fink, and the command
>>> fink list fftw
>>
>> gives as output
>>
>> i fftw 2.1.5-1015 Discrete Fourier Transform Library
>> fftw-mpi 2.1.5-1015 Discrete Fourier Transform Library
>> fftw-mpi-shlibs 2.1.5-1015 Discrete Fourier Transform Library
>> i fftw-shlibs 2.1.5-1015 Discrete Fourier Transform Library
>> i fftw3 3.2.2-1 Discrete Fourier Transform Lib (Ver 3)
>> i fftw3-shlibs 3.2.2-1 Discrete Fourier Transform Lib (Ver 3)
>>
>>
>> thus it seems that they are installed.
>>
>> thus, I conclude that they are there but not in the right place... but I don't know how to find them and how to make the installation work.
>> can anybody help me?
>>
> Try looking in /sw/lib and /sw/include.
>
> /Erik
>>
>> =====================================================================
>> checking build system type... i386-apple-darwin10.2.0
>> checking host system type... i386-apple-darwin10.2.0
>> checking for a BSD-compatible install... /usr/bin/install -c
>> checking whether build environment is sane... yes
>> checking for a thread-safe mkdir -p... config/install-sh -c -d
>> checking for gawk... no
>> checking for mawk... no
>> checking for nawk... no
>> checking for awk... awk
>> checking whether make sets $(MAKE)... yes
>> checking how to create a ustar tar archive... gnutar
>> checking for cc... cc
>> checking for C compiler default output file name... a.out
>> checking whether the C compiler works... yes
>> checking whether we are cross compiling... no
>> checking for suffix of executables... checking for suffix of object files... o
>> checking whether we are using the GNU C compiler... yes
>> checking whether cc accepts -g... yes
>> checking for cc option to accept ISO C89... none needed
>> checking for style of include used by make... GNU
>> checking dependency style of cc... gcc3
>> checking dependency style of cc... gcc3
>> checking how to run the C preprocessor... cc -E
>> checking whether cc accepts -O3... yes
>> checking whether cc accepts -funroll-all-loops... yes
>> checking whether cc accepts -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops... yes
>> checking for grep that handles long lines and -e... /usr/bin/grep
>> checking for egrep... /usr/bin/grep -E
>> checking for ANSI C header files... yes
>> checking for sys/types.h... yes
>> checking for sys/stat.h... yes
>> checking for stdlib.h... yes
>> checking for string.h... yes
>> checking for memory.h... yes
>> checking for strings.h... yes
>> checking for inttypes.h... yes
>> checking for stdint.h... yes
>> checking for unistd.h... yes
>> checking whether byte ordering is bigendian... no
>> checking for int... yes
>> checking size of int... 4
>> checking for long int... yes
>> checking size of long int... 8
>> checking for long long int... yes
>> checking size of long long int... 8
>> checking for off_t... yes
>> checking size of off_t... 8
>> checking that size_t can hold pointers... yes
>> checking floating-point format... IEEE754 (little-endian byte and word order)
>> checking for a BSD-compatible install... /usr/bin/install -c
>> checking whether ln -s works... yes
>> checking whether make sets $(MAKE)... (cached) yes
>> checking for a sed that does not truncate output... /usr/bin/sed
>> checking for ld used by cc... /usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld
>> checking if the linker (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) is GNU ld... no
>> checking for /usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld option to reload object files... -r
>> checking for BSD-compatible nm... /usr/bin/nm
>> checking how to recognise dependent libraries... pass_all
>> checking dlfcn.h usability... yes
>> checking dlfcn.h presence... yes
>> checking for dlfcn.h... yes
>> checking for g++... g++
>> checking whether we are using the GNU C++ compiler... yes
>> checking whether g++ accepts -g... yes
>> checking dependency style of g++... gcc3
>> checking how to run the C++ preprocessor... g++ -E
>> checking the maximum length of command line arguments... 196608
>> checking command to parse /usr/bin/nm output from cc object... ok
>> checking for objdir... .libs
>> checking for ar... ar
>> checking for ranlib... ranlib
>> checking for strip... strip
>> checking if cc supports -fno-rtti -fno-exceptions... no
>> checking for cc option to produce PIC... -fno-common
>> checking if cc PIC flag -fno-common works... yes
>> checking if cc static flag -static works... no
>> checking if cc supports -c -o file.o... yes
>> checking whether the cc linker (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) supports shared libraries... yes
>> checking dynamic linker characteristics... darwin10.2.0 dyld
>> checking how to hardcode library paths into programs... immediate
>> checking whether stripping libraries is possible... yes
>> checking if libtool supports shared libraries... yes
>> checking whether to build shared libraries... no
>> checking whether to build static libraries... yes
>> configure: creating libtool
>> appending configuration tag "CXX" to libtool
>> checking for ld used by g++... /usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld
>> checking if the linker (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) is GNU ld... no
>> checking whether the g++ linker (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) supports shared libraries... yes
>> checking for g++ option to produce PIC... -fno-common
>> checking if g++ PIC flag -fno-common works... yes
>> checking if g++ static flag -static works... no
>> checking if g++ supports -c -o file.o... yes
>> checking whether the g++ linker (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) supports shared libraries... yes
>> checking dynamic linker characteristics... darwin10.2.0 dyld
>> checking how to hardcode library paths into programs... immediate
>> appending configuration tag "F77" to libtool
>> checking for special C compiler options needed for large files... no
>> checking for _FILE_OFFSET_BITS value needed for large files... no
>> checking for _LARGEFILE_SOURCE value needed for large files... no
>> checking for sqrt in -lm... yes
>> checking for fftw3.h... yes
>> checking for main in -lfftw3f... no
>> configure: error: Cannot find fftw3f library
>>
>>
>>
>> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>> Valentina Tozzini
>> NEST-INFM-CNR, Scuola Normale Superiore
>> Piazza San Silvestro, 12 - 56127 Pisa (PI) - Italy
>>
>> Phone: +39 050 509 433 Fax: +39 050 509 417
>> Email: tozzini at nest.sns.it Web: www.nest.sns.it/tozzini
>> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>>
>>
>>
>>
>>
>>
>
>
> --
> -----------------------------------------------
> Erik Marklund, PhD student
> Laboratory of Molecular Biophysics,
> Dept. of Cell and Molecular Biology, Uppsala University.
> Husargatan 3, Box 596, 75124 Uppsala, Sweden
> phone: +46 18 471 4537 fax: +46 18 511 755
> erikm at xray.bmc.uu.se http://xray.bmc.uu.se/molbiophys
>
> --
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~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Valentina Tozzini
NEST-INFM-CNR, Scuola Normale Superiore
Piazza San Silvestro, 12 - 56127 Pisa (PI) - Italy
Phone: +39 050 509 433 Fax: +39 050 509 417
Email: tozzini at nest.sns.it Web: www.nest.sns.it/tozzini
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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