[gmx-users] Viscosity determination

[Lum Nforbi]

Dear all,

  Below is my output for viscosity determination. In order to get a value
for the viscosity, do I just take an average of the numbers in the third
column?

# This file was created Wed Jan  6 16:25:24 2010
# by the following command:
# g_energy -f wfullmdrun_ener.edr -vis viscosity.xvg
#
# g_energy is part of G R O M A C S:
#
# Giant Rising Ordinary Mutants for A Clerical Setup
#
@    title "Bulk Viscosity"
@    xaxis  label "Time (ps)"
@    yaxis  label "\8h\4 (cp)"
@TYPE xy
@ view 0.15, 0.15, 0.75, 0.85
@ legend on
@ legend box on
@ legend loctype view
@ legend 0.78, 0.8
@ legend length 2
@ s0 legend "Shear"
@ s1 legend "Bulk"
  0.199995    0.834084    0.546697
   0.39999    0.883405     0.51992
  0.599985    0.905292    0.495556
   0.79998    0.913911    0.470734
  0.999975    0.915144    0.452457
   1.19997    0.915121    0.438746
   1.39997    0.917106    0.430864
   1.59996    0.920071    0.418252
   1.79996    0.921777    0.403171
   1.99995    0.918983    0.394725
   2.19995    0.918122    0.387048
   2.39994    0.923332    0.383686

Thank you,
Lum
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